Intro to R and RStudio for Genomics

University of Strasbourg - ETENA

January 13, 2025

9:00 am - 5:00 pm CET

Instructors: Valentine Gilbart, Julien Godet

Helpers: Valérie Cognat, Stéfanie Graindorge

General Information

The Carpentries project comprises the Software Carpentry, Data Carpentry, and Library Carpentry communities of Instructors, Trainers, Maintainers, helpers, and supporters who share a mission to teach foundational computational and data science skills to researchers.

Who: The course is aimed at graduate students and other researchers. You don't need to have any previous knowledge of the tools that will be presented at the workshop.

Where: Coworking ETENA - Bâtiment hygiène 1, Pl. de l'Hôpital, 67000 Strasbourg. Get directions with Google Maps or University of Strasbourg permalink. For those familiar with the Medecine Campus, Etena offices are in the building called "Administration faculté dentaire", close to "L'Amicale des étudiants de médecine de Strasbourg".

When: January 13, 2025; 9:00 am - 5:00 pm CET Add to your Google Calendar.

Requirements: Participants must bring a laptop with a Mac, Linux, or Windows operating system (not a tablet, Chromebook, etc.). They should have followed the Setup instructions prior to the day of the workshop (listed below).

Accessibility: We are committed to making this workshop accessible to everybody. The workshop organizers have checked that:

We are dedicated to providing a positive and accessible learning environment for all. We do not require participants to provide documentation of disabilities or disclose any unnecessary personal information. However, we do want to help create an inclusive, accessible experience for all participants. We encourage you to share any information that would be helpful to make your Carpentries experience accessible. To request an accommodation for this workshop, please fill out the accommodation request form. If you have questions or need assistance with the accommodation form please email us.

Glosario is a multilingual glossary for computing and data science terms. The glossary helps learners attend workshops and use our lessons to make sense of computational and programming jargon written in English by offering it in their native language. Translating data science terms also provides a teaching tool for Carpentries Instructors to reduce barriers for their learners.

Contact: Please email cobolet@unistra.fr for more information.

Roles: To learn more about the roles at the workshop (who will be doing what), refer to our Workshop FAQ.


Code of Conduct

Everyone who participates in Carpentries activities is required to conform to the Code of Conduct. This document also outlines how to report an incident if needed.


Surveys

Please be sure to complete these surveys before and after the workshop.

Pre-workshop Survey

Post-workshop Survey


Schedule

Day 1

Before starting Pre-workshop survey
Morning Introducing R and RStudio, R Basics
Lunch break -
Afternoon Using packages, Data Wrangling and Visulization
Before leaving Post-workshop survey


Setup

To participate, you will need access to R and RStudio and an up-to-date web browser. Prior to the workshop, please either:

NB: Posit is the new company name of the former RStudio company, follow the links to the wikipedia pages to learn more about the product RStudio, and about the Posit PBC company.

The Carpentries maintains a list of common issues that occur during installation as a reference for instructors that may be useful on the Configuration Problems and Solutions wiki page.

May you have any other issue in the installation, please contact at cobolet@unistra.fr or come 30 minutes in advance to the workshop so that we can help.